1FRY Antimicrobial Protein date Sep 07, 2000
title The Solution Structure Of Sheep Myeloid Antimicrobial Peptid Residues 1-29 (Smap29)
authors B.F.Tack, M.V.Sawai, W.R.Kearney, A.D.Robertson, M.A.Sherman, W.W T.Hong, L.M.Boo, H.Wu, A.J.Waring, R.I.Lehrer
compound source
Molecule: Myeloid Antimicrobial Peptide
Chain: A
Synonym: Smap29, Smap-29 Gene Product
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Sheep. Nmr Were Synthesized Using Fmoc Chemistry
methodSolution NMR
note 1FRY is a representative structure
Primary referenceSMAP-29 has two LPS-binding sites and a central hinge., Tack BF, Sawai MV, Kearney WR, Robertson AD, Sherman MA, Wang W, Hong T, Boo LM, Wu H, Waring AJ, Lehrer RI, Eur J Biochem 2002 Feb;269(4):1181-9. PMID:11856344
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (1fry.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 1FRY
  • Original NMR restraints for 1FRY from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1FRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FRY from S2C, [Save to disk]
    • View 1FRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FRY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FRY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1frya_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fry] [1fry_A]
  • SWISS-PROT database: [P49928]
  • Domain organization of [SC51_SHEEP] by SWISSPFAM
    • Other resources with information on 1FRY
  • Community annotation for 1FRY at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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