1FS2 Ligase date Sep 08, 2000
title Insights Into Scf Ubiquitin Ligases From The Structure Of Th Skp2 Complex
authors B.A.Schulman, A.C.Carrano, P.D.Jeffrey, Z.Bowen, E.R.E.Kinnucan, M.S.Finnin, S.J.Elledge, J.W.Harper, M.Pagano, N.P.Pavletich
compound source
Molecule: Skp2
Chain: A, C
Fragment: Residues 101-153; 193-410 (F-Box + 8 Lrrs)
Synonym: Cyclin Acdk2-Associated P45
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Skp1
Chain: B, D
Fragment: Residues 1-37; 43-147
Synonym: Cyclin Acdk2-Associated P19
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.246 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.670 87.020 178.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
related structures by homologous chain: 1FQV, 1P22
Gene
Ontology
ChainFunctionProcessComponent
D, B


Primary referenceInsights into SCF ubiquitin ligases from the structure of the Skp1-Skp2 complex., Schulman BA, Carrano AC, Jeffrey PD, Bowen Z, Kinnucan ER, Finnin MS, Elledge SJ, Harper JW, Pagano M, Pavletich NP, Nature 2000 Nov 16;408(6810):381-6. PMID:11099048
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (1fs2.pdb1.gz) 119 Kb
  • CSU: Contacts of Structural Units for 1FS2
  • Likely Quarternary Molecular Structure file(s) for 1FS2
  • Retrieve 1FS2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FS2 from S2C, [Save to disk]
  • View 1FS2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FS2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FS2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fs2a1, region A:105-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2a2, region A:146-401 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2b2, region B:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2b1, region B:80-146 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2c1, region C:105-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2c2, region C:146-401 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2d2, region D:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2d1, region D:80-146 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fs2_B] [1fs2_A] [1fs2_D] [1fs2] [1fs2_C]
  • SWISS-PROT database: [P63208] [Q13309]
  • Domain organization of [SKP1_HUMAN] [SKP2_HUMAN] by SWISSPFAM
  • Domains found in 1FS2: [FBOX] [LRR] [Skp1 ] by SMART
  • Other resources with information on 1FS2
  • Community annotation for 1FS2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science