1FSE Transcription date Sep 08, 2000
title Crystal Structure Of The Bacillus Subtilis Regulatory Protei
authors V.M.A.Ducros, R.J.Lewis, C.S.Verma, E.J.Dodson, G.Leonard, J.P.Turkenburg, G.N.Murshudov, A.J.Wilkinson, J.A.Brannigan
compound source
Molecule: Gere
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b
symmetry Space Group: C 1 2 1
R_factor 0.214 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.019 61.749 71.743 90.00 97.08 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of GerE, the ultimate transcriptional regulator of spore formation in Bacillus subtilis., Ducros VM, Lewis RJ, Verma CS, Dodson EJ, Leonard G, Turkenburg JP, Murshudov GN, Wilkinson AJ, Brannigan JA, J Mol Biol 2001 Mar 2;306(4):759-71. PMID:11243786
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1fse.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (1fse.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (1fse.pdb3.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1FSE
  • CSU: Contacts of Structural Units for 1FSE
  • Likely Quarternary Molecular Structure file(s) for 1FSE
  • Retrieve 1FSE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FSE from S2C, [Save to disk]
    • View 1FSE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FSE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FSE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fsea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fseb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fsec_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1fsed_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fsee_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1fsef_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fse_E] [1fse_C] [1fse_F] [1fse_B] [1fse] [1fse_A] [1fse_D]
  • SWISS-PROT database: [P11470]
  • Domain organization of [GERE_BACSU] by SWISSPFAM
  • Domain found in 1FSE: [HTH_LUXR ] by SMART
    • Other resources with information on 1FSE
  • Community annotation for 1FSE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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