1FSY Hydrolase date Sep 11, 2000
title Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor Cloxacillinboronic Acid
authors E.Caselli, R.A.Powers, L.C.Blasczcak, C.Y.Wu, F.Prati, B.K.Shoich
compound source
Molecule: Cephalosporinase
Chain: A, B
Synonym: Beta-Lactamase
Ec: 3.5.2.6
Engineered: Yes
Other_details: Ser 64 Binds To Boron Of Ligand 105 In Both
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pogo295
symmetry Space Group: C 1 2 1
R_factor 0.196 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.360 77.570 97.460 90.00 116.18 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand 105, PO4 BindingDB enzyme Hydrolase E.C.3.5.2.6 BRENDA
related structures by homologous chain: 1GCE, 1KE4
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEnergetic, structural, and antimicrobial analyses of beta-lactam side chain recognition by beta-lactamases., Caselli E, Powers RA, Blasczcak LC, Wu CY, Prati F, Shoichet BK, Chem Biol 2001 Jan;8(1):17-31. PMID:11182316
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (1fsy.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 1FSY
  • CSU: Contacts of Structural Units for 1FSY
  • Likely Quarternary Molecular Structure file(s) for 1FSY
  • Structure Factors (652 Kb)
  • Retrieve 1FSY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FSY from S2C, [Save to disk]
  • Re-refined 1fsy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FSY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FSY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FSY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fsya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fsyb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fsy_B] [1fsy_A] [1fsy]
  • SWISS-PROT database: [P00811]
  • Domain organization of [AMPC_ECOLI] by SWISSPFAM
  • Other resources with information on 1FSY
  • Community annotation for 1FSY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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