1FTT Dna Binding Protein date Oct 03, 1995
title Thyroid Transcription Factor 1 Homeodomain (Rattus Norvegicu
authors F.Fogolari, G.Esposito, G.Damante, S.Formisano, R.Di Lauro, P.Vig
compound source
Molecule: Thyroid Transcription Factor 1 Homeodomain
Chain: A
Synonym: Ttf-1 Hd
Engineered: Yes
Other_details: Ph = 4.0 - 4.1, T = 287 - 289 K, Nan3 (Wv) 0.5%
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Rat Ttf-1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pt7.7
Expression_system_gene: Rat Ttf-1
methodSolution NMR
note 1FTT is a representative structure
related structures by homologous chain: 1QRY
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAnalysis of the solution structure of the homeodomain of rat thyroid transcription factor 1 by 1H-NMR spectroscopy and restrained molecular mechanics., Esposito G, Fogolari F, Damante G, Formisano S, Tell G, Leonardi A, Di Lauro R, Viglino P, Eur J Biochem 1996 Oct 1;241(1):101-13. PMID:8898894
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (413 Kb) [Save to disk]
  • Biological Unit Coordinates (1ftt.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1FTT
  • Original NMR restraints for 1FTT from PDB
  • Retrieve 1FTT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FTT from S2C, [Save to disk]
    • View 1FTT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FTT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FTT, from MSDmotif at EBI
  • Genome occurence of 1FTT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ftt__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ftt] [1ftt_A]
  • SWISS-PROT database: [P23441]
  • Domain organization of [NKX21_RAT] by SWISSPFAM
  • Domain found in 1FTT: [HOX ] by SMART
    • Other resources with information on 1FTT
  • Community annotation for 1FTT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1FTT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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