1FUN	Oxidoreductase	date	Jul 23, 1998
title	Superoxide Dismutase Mutant With Lys 136 Replaced By Glu, Cy Replaced By Ala And Cys 111 Replaced By Ser (K136e, C6a, C1
authors	T.P.Lo, J.A.Tainer, E.D.Getzoff
compound		source
Molecule: Superoxide Dismutase Chain: A, F, B, G, C, H, D, I, E, J Synonym: Sod Ec: 1.15.1.1 Engineered: Yes Mutation: Yes Other_details: Five Biological Dimers Are Present In The Crystallographic Asymmetric Unit. They Are A And F, B And G D And I, E And J.		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.189 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 205.200 167.000 145.500 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.85 Å
ligand	CU, SO4, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
related structures	by homologous chain: 1OZT, 1RK7
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G superoxide dismutase activit... protein binding anterograde axonal transport... retrograde axonal transport
Primary reference	Computational, pulse-radiolytic, and structural investigations of lysine-136 and its role in the electrostatic triad of human Cu,Zn superoxide dismutase., Fisher CL, Cabelli DE, Hallewell RA, Beroza P, Lo TP, Getzoff ED, Tainer JA, Proteins 1997 Sep;29(1):103-12. PMID:9294870

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (236 Kb) [Save to disk] Biological Unit Coordinates (1fun.pdb1.gz) 49 Kb Biological Unit Coordinates (1fun.pdb2.gz) 49 Kb Biological Unit Coordinates (1fun.pdb3.gz) 49 Kb Biological Unit Coordinates (1fun.pdb4.gz) 48 Kb Biological Unit Coordinates (1fun.pdb5.gz) 48 Kb LPC: Ligand-Protein Contacts for 1FUN CSU: Contacts of Structural Units for 1FUN Likely Quarternary Molecular Structure file(s) for 1FUN Retrieve 1FUN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FUN from S2C, [Save to disk]

View 1FUN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FUN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FUN, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1funa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1funb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1func_, region C [Jmol] [rasmolscript] [script source]     - Domain d1fund_, region D [Jmol] [rasmolscript] [script source]     - Domain d1fune_, region E [Jmol] [rasmolscript] [script source]     - Domain d1funf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1fung_, region G [Jmol] [rasmolscript] [script source]     - Domain d1funh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1funi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1funj_, region J [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fun_J] [1fun_C] [1fun_F] [1fun] [1fun_B] [1fun_G] [1fun_A] [1fun_H] [1fun_E] [1fun_I] [1fun_D] SWISS-PROT database: [P00441] Domain organization of [SODC_HUMAN] by SWISSPFAM

Other resources with information on 1FUN

Community annotation for 1FUN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---