1FV8 Dna date Sep 19, 2000
title Nmr Study Of An Heterochiral Hairpin
authors C.El Amri, O.Mauffret, F.Santamaria, B.Rayner, S.Fermandjian
compound source
Molecule: 5'-D(Tpaptpcpap(0dt)Pcpgpaptpa)-3'
Chain: A
Fragment: At(L)C Hairpin
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Comes From A Pbr322 Topoisomer Cleavage Site
methodSolution NMR
ligand 0DT enzyme
Primary referenceNMR study of a heterochiral DNA hairpin:impact of L-enantiomery in the loop., El Amri C, Mauffret O, Santamariar F, Tevanian G, Rayner S, Fermandjian S, J Biomol Struct Dyn 2001 Dec;19(3):459-70. PMID:11790144
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1fv8.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 1FV8
  • CSU: Contacts of Structural Units for 1FV8
  • Original NMR restraints for 1FV8 from PDB
  • Retrieve 1FV8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FV8 from S2C, [Save to disk]
    • View 1FV8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FV8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FV8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fv8] [1fv8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1FV8
  • Community annotation for 1FV8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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