1FVM Complex of vancomycin with DI-acetyl-LYS-D-ALA-D-ALA date
authors Nitanai, Y., Kakoi, K., Aoki, K.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 3FG, BGC, DAL, DLS, GHP, MLU, OMY, OMZ, RER enzyme
note 1FVM (Molecule of the Month:pdb192)
Primary referenceCrystal structures of the complexes between vancomycin and cell-wall precursor analogs., Nitanai Y, Kikuchi T, Kakoi K, Hanamaki S, Fujisawa I, Aoki K, J Mol Biol. 2009 Feb 6;385(5):1422-32. Epub 2008 Oct 19. PMID:18976660
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1fvm.pdb1.gz) 4 Kb
  • Biological Unit Coordinates (1fvm.pdb2.gz) 4 Kb
  • Biological Unit Coordinates (1fvm.pdb3.gz) 4 Kb
  • Biological Unit Coordinates (1fvm.pdb4.gz) 4 Kb
  • Biological Unit Coordinates (1fvm.pdb5.gz) 4 Kb
  • Biological Unit Coordinates (1fvm.pdb6.gz) 4 Kb
  • LPC: Ligand-Protein Contacts for 1FVM
  • CSU: Contacts of Structural Units for 1FVM
  • Likely Quarternary Molecular Structure file(s) for 1FVM
  • Retrieve 1FVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FVM from S2C, [Save to disk]
  • View 1FVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FVM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FVM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fvm_A] [1fvm_G] [1fvm] [1fvm_F] [1fvm_I] [1fvm_L] [1fvm_B] [1fvm_D] [1fvm_E] [1fvm_K] [1fvm_C] [1fvm_J] [1fvm_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1FVM
  • Community annotation for 1FVM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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