1FVU Toxin date Sep 20, 2000
title Crystal Structure Of Botrocetin
authors U.Sen, S.Vasudevan, G.Subbarao, R.A.Mcclintoc, R.Celikel, Z.M.Ruggeri, K.I.Varughese
compound source
Molecule: Botrocetin Alpha Chain
Chain: A, C
Synonym: Platelet Coagglutinin Alpha
 Organism_scientific: Bothrops Jararaca
Organism_common: Jararaca
Organism_taxid: 8724
Secretion: Venom

Molecule: Botrocetin Beta Chain
Chain: B, D
Synonym: Platelet Coagglutinin Beta
Organism_scientific: Bothrops Jararaca
Organism_common: Jararaca
Organism_taxid: 8724
Secretion: Venom
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.829 69.666 103.509 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MG enzyme
related structures by homologous chain: 1J34, 1J35
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • toxin activity


    • Primary referenceCrystal structure of the von Willebrand factor modulator botrocetin., Sen U, Vasudevan S, Subbarao G, McClintock RA, Celikel R, Ruggeri ZM, Varughese KI, Biochemistry 2001 Jan 16;40(2):345-52. PMID:11148028
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1fvu.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 1FVU
  • CSU: Contacts of Structural Units for 1FVU
  • Likely Quarternary Molecular Structure file(s) for 1FVU
  • Retrieve 1FVU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FVU from S2C, [Save to disk]
    • View 1FVU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FVU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FVU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fvua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fvub_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fvuc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1fvud_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fvu_D] [1fvu] [1fvu_C] [1fvu_A] [1fvu_B]
  • SWISS-PROT database: [P22029] [P22030]
  • Domain organization of [BOTA_BOTJA] [BOTB_BOTJA] by SWISSPFAM
  • Domain found in 1FVU: [CLECT ] by SMART
    • Other resources with information on 1FVU
  • Community annotation for 1FVU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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