1FWV Sugar Binding Protein date Sep 24, 2000
title Crystal Structure Of The Cysteine-Rich Domain Of Mannose Rec Complexed With 3-So4-Lewis(A)
authors Y.Liu, Z.Misulovin, P.J.Bjorkman
compound source
Molecule: Cysteine-Rich Domain Of Mannose Receptor
Chain: A
Fragment: N-Terminal Domain Of Mannose Receptor
Engineered: Yes
Other_details: Complexed With 3-So4-Lewis(A)
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Sus Scrofa
Expression_system_common: Pig
Expression_system_taxid: 9823
Expression_system_cell: 293 Cells
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.608 41.158 99.646 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand FUC, MAG, SGA enzyme
related structures by homologous chain: 1DQO, 1FWU
Primary referenceThe molecular mechanism of sulfated carbohydrate recognition by the cysteine-rich domain of mannose receptor., Liu Y, Misulovin Z, Bjorkman PJ, J Mol Biol 2001 Jan 19;305(3):481-90. PMID:11152606
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1fwv.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1FWV
  • CSU: Contacts of Structural Units for 1FWV
  • Likely Quarternary Molecular Structure file(s) for 1FWV
  • Retrieve 1FWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FWV from S2C, [Save to disk]
    • View 1FWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FWV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FWV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fwva_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fwv] [1fwv_A]
  • SWISS-PROT database: [Q61830]
  • Domain organization of [MRC1_MOUSE] by SWISSPFAM
  • Domain found in 1FWV: [RICIN ] by SMART
    • Other resources with information on 1FWV
  • Community annotation for 1FWV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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