1FWX Oxidoreductase date Sep 25, 2000
title Crystal Structure Of Nitrous Oxide Reductase From P. Denitri
authors K.Brown, K.Djinovic-Carugo, T.Haltia, I.Cabrito, M.Saraste, J.J.M I.Moura, M.Tegoni, C.Cambillau
compound source
Molecule: Nitrous Oxide Reductase
Chain: A, B, C, D
Ec: 1.7.99.6
 Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266
symmetry Space Group: P 1 21 1
R_factor 0.241 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.595 105.090 116.696 90.00 110.69 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CA, CL, CUA, CUZ enzyme Oxidoreductase E.C.1.7.99.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • cytochrome-c oxidase activit...


    • Primary referenceRevisiting the catalytic CuZ cluster of nitrous oxide (N2O) reductase. Evidence of a bridging inorganic sulfur., Brown K, Djinovic-Carugo K, Haltia T, Cabrito I, Saraste M, Moura JJ, Moura I, Tegoni M, Cambillau C, J Biol Chem 2000 Dec 29;275(52):41133-6. PMID:11024061
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (423 Kb) [Save to disk]
  • Biological Unit Coordinates (1fwx.pdb1.gz) 213 Kb
  • Biological Unit Coordinates (1fwx.pdb2.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 1FWX
  • CSU: Contacts of Structural Units for 1FWX
  • Likely Quarternary Molecular Structure file(s) for 1FWX
  • Structure Factors (2187 Kb)
  • Retrieve 1FWX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FWX from S2C, [Save to disk]
  • Re-refined 1fwx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1FWX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FWX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FWX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fwxa1, region A:452-581 [Jmol] [rasmolscript] [script source]
        - Domain d1fwxa2, region A:8-451 [Jmol] [rasmolscript] [script source]
        - Domain d1fwxb1, region B:452-580 [Jmol] [rasmolscript] [script source]
        - Domain d1fwxb2, region B:9-451 [Jmol] [rasmolscript] [script source]
        - Domain d1fwxc1, region C:452-581 [Jmol] [rasmolscript] [script source]
        - Domain d1fwxc2, region C:9-451 [Jmol] [rasmolscript] [script source]
        - Domain d1fwxd2, region D:10-451 [Jmol] [rasmolscript] [script source]
        - Domain d1fwxd1, region D:452-580 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fwx_D] [1fwx_A] [1fwx] [1fwx_C] [1fwx_B]
  • SWISS-PROT database: [Q51705]
  • Domain organization of [NOSZ_PARDE] by SWISSPFAM
    • Other resources with information on 1FWX
  • Community annotation for 1FWX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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