1FXO Transferase date Sep 26, 2000
title The Structural Basis Of The Catalytic Mechanism And Regulati Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Compl
authors W.Blankenfeldt, J.S.Lam, J.H.Naismith
compound source
Molecule: Glucose-1-Phosphate Thymidylyltransferase
Chain: A, B, C, D, E, F, G, H
Synonym: Glucose-1-Phosphate Thymidylyltransferase (Rmla)
Ec: 2.7.7.24
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23a(+)
symmetry Space Group: P 1
R_factor 0.142 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.494 73.064 134.738 89.93 80.92 81.11
method X-Ray Diffractionresolution 1.66 Å
ligand SO4, TMP enzyme Transferase E.C.2.7.7.24 BRENDA
related structures by homologous chain: 1LVW
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceThe structural basis of the catalytic mechanism and regulation of glucose-1-phosphate thymidylyltransferase (RmlA)., Blankenfeldt W, Asuncion M, Lam JS, Naismith JH, EMBO J 2000 Dec 15;19(24):6652-63. PMID:11118200
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (899 Kb) [Save to disk]
  • Biological Unit Coordinates (1fxo.pdb1.gz) 453 Kb
  • Biological Unit Coordinates (1fxo.pdb2.gz) 444 Kb
  • LPC: Ligand-Protein Contacts for 1FXO
  • CSU: Contacts of Structural Units for 1FXO
  • Likely Quarternary Molecular Structure file(s) for 1FXO
  • Structure Factors (2136 Kb)
  • Retrieve 1FXO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FXO from S2C, [Save to disk]
  • Re-refined 1fxo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FXO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FXO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FXO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fxoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fxob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fxoc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1fxod_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fxoe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1fxof_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1fxog_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1fxoh_, region H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fxo_E] [1fxo_A] [1fxo_B] [1fxo_G] [1fxo_F] [1fxo] [1fxo_D] [1fxo_C] [1fxo_H]
  • SWISS-PROT database: [Q9HU22]
  • Domain organization of [Q9HU22_PSEAE] by SWISSPFAM
  • Other resources with information on 1FXO
  • Community annotation for 1FXO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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