1FY4	Hydrolase	date	Sep 28, 2000
title	Fusarium Oxysporum Trypsin At Atomic Resolution
authors	W.R.Rypniewski, P.Oestergaard, M.Noerregaard-Madsen, M.Dauter, K
compound		source
Molecule: Trypsin Chain: A Ec: 3.4.21.4		Organism_scientific: Fusarium Oxysporum Organism_taxid: 5507
Molecule: Gly-Ala-Arg Chain: B Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.132 36.774 39.639 102.24 104.75 102.85
method	X-Ray Diffraction	resolution	0.81 Å
ligand	GOL, SO4	enzyme	Hydrolase E.C.3.4.21.4 BRENDA
related structures	by homologous chain: 1FN8, 1GDN
Gene Ontology	Chain Function Process Component A
Primary reference	Fusarium oxysporum trypsin at atomic resolution at 100 and 283 K: a study of ligand binding., Rypniewski WR, Ostergaard PR, Norregaard-Madsen M, Dauter M, Wilson KS, Acta Crystallogr D Biol Crystallogr 2001 Jan;57(Pt 1):8-19. PMID:11134922

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (1fy4.pdb1.gz) 122 Kb LPC: Ligand-Protein Contacts for 1FY4 CSU: Contacts of Structural Units for 1FY4 Likely Quarternary Molecular Structure file(s) for 1FY4 Structure Factors (1521 Kb) Retrieve 1FY4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FY4 from S2C, [Save to disk] Re-refined 1fy4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1FY4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FY4

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1FY4 1FY4A 1FY4B from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FY4, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fy4a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fy4_A] [1fy4_B] [1fy4] SWISS-PROT database: [P35049] Domain organization of [TRYP_FUSOX] by SWISSPFAM Domain found in 1FY4: [Tryp_SPc ] by SMART

Other resources with information on 1FY4

Community annotation for 1FY4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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