1FZF	Blood Coagulation	date	Dec 28, 1998
title	Crystal Structure Of Fragment Double-D From Human Fibrin Wit Peptide Ligand Gly-His-Arg-Pro-Amide
authors	S.J.Everse, G.Spraggon, L.Veerapandian, R.F.Doolittle
compound		source
Molecule: Fibrinogen Chain: A, D Fragment: Fragment Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood Tissue: Blood
Molecule: Fibrinogen Chain: B, E Fragment: Fragment Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood Tissue: Blood
Molecule: Fibrinogen Chain: C, F Fragment: Fragment Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood Tissue: Blood
Molecule: Fibrinogen Chain: S, T, M, N Fragment: Fragment Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood
symmetry	Space Group: P 21 21 21	R_factor 0.233 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.800 149.400 234.700 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	CA, NAG	enzyme
related structures	by homologous chain: 1LTJ, 1M1J, 1RE4
Gene Ontology	Chain Function Process Component A, D E, B F, C
Primary reference	Conformational changes in fragments D and double-D from human fibrin(ogen) upon binding the peptide ligand Gly-His-Arg-Pro-amide., Everse SJ, Spraggon G, Veerapandian L, Doolittle RF, Biochemistry 1999 Mar 9;38(10):2941-6. PMID:10074346

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk] Biological Unit Coordinates (1fzf.pdb1.gz) 213 Kb LPC: Ligand-Protein Contacts for 1FZF CSU: Contacts of Structural Units for 1FZF Likely Quarternary Molecular Structure file(s) for 1FZF Retrieve 1FZF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FZF from S2C, [Save to disk]

View 1FZF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FZF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FZF, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fzfa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1fzfb2, region B:157-199 [Jmol] [rasmolscript] [script source]     - Domain d1fzfb1, region B:200-459 [Jmol] [rasmolscript] [script source]     - Domain d1fzfc2, region C:102-141 [Jmol] [rasmolscript] [script source]     - Domain d1fzfc1, region C:142-393 [Jmol] [rasmolscript] [script source]     - Domain d1fzfd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1fzfe2, region E:164-199 [Jmol] [rasmolscript] [script source]     - Domain d1fzfe1, region E:200-459 [Jmol] [rasmolscript] [script source]     - Domain d1fzff2, region F:109-141 [Jmol] [rasmolscript] [script source]     - Domain d1fzff1, region F:142-393 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fzf_M] [1fzf_D] [1fzf_F] [1fzf_T] [1fzf_E] [1fzf] [1fzf_A] [1fzf_S] [1fzf_B] [1fzf_C] [1fzf_N] SWISS-PROT database: [P02671] [P02675] [P02679] Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM Domain found in 1FZF: [FBG ] by SMART

Other resources with information on 1FZF

Community annotation for 1FZF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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