1FZG	Blood Coagulation	date	Jan 01, 1999
title	Crystal Structure Of Fragment D From Human Fibrinogen With T Ligand Gly-His-Arg-Pro-Amide
authors	S.J.Everse, G.Spraggon, L.Veerapandian, R.F.Doolittle
compound		source
Molecule: Fibrinogen Chain: A, D Fragment: Fragment Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood Tissue: Blood
Molecule: Fibrinogen Chain: B, E Fragment: Fragment Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood Tissue: Blood
Molecule: Fibrinogen Chain: C, F Fragment: Fragment Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood Tissue: Blood
Molecule: Fibrinogen Chain: S, T, M, N Fragment: Fragment Double-D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood
symmetry	Space Group: P 21 21 21	R_factor 0.233 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.800 149.400 234.700 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CA, NAG	enzyme
related structures	by homologous chain: 1FIC, 1RE3, 1RF1
Gene Ontology	Chain Function Process Component A, D E, B F, C
Primary reference	Conformational changes in fragments D and double-D from human fibrin(ogen) upon binding the peptide ligand Gly-His-Arg-Pro-amide., Everse SJ, Spraggon G, Veerapandian L, Doolittle RF, Biochemistry 1999 Mar 9;38(10):2941-6. PMID:10074346

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk] Biological Unit Coordinates (1fzg.pdb1.gz) 214 Kb LPC: Ligand-Protein Contacts for 1FZG CSU: Contacts of Structural Units for 1FZG Likely Quarternary Molecular Structure file(s) for 1FZG Retrieve 1FZG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FZG from S2C, [Save to disk]

View 1FZG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FZG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FZG, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fzga_, region A [Jmol] [rasmolscript] [script source]     - Domain d1fzgb2, region B:157-199 [Jmol] [rasmolscript] [script source]     - Domain d1fzgb1, region B:200-459 [Jmol] [rasmolscript] [script source]     - Domain d1fzgc2, region C:102-141 [Jmol] [rasmolscript] [script source]     - Domain d1fzgc1, region C:142-393 [Jmol] [rasmolscript] [script source]     - Domain d1fzgd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1fzge2, region E:164-199 [Jmol] [rasmolscript] [script source]     - Domain d1fzge1, region E:200-459 [Jmol] [rasmolscript] [script source]     - Domain d1fzgf2, region F:109-141 [Jmol] [rasmolscript] [script source]     - Domain d1fzgf1, region F:142-393 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fzg_T] [1fzg_E] [1fzg_S] [1fzg] [1fzg_M] [1fzg_D] [1fzg_F] [1fzg_C] [1fzg_N] [1fzg_B] [1fzg_A] SWISS-PROT database: [P02671] [P02675] [P02679] Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM Domain found in 1FZG: [FBG ] by SMART

Other resources with information on 1FZG

Community annotation for 1FZG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---