1FZJ Immune System date Oct 03, 2000
title Mhc Class I Natural Mutant H-2kbm1 Heavy Chain Complexed Wit Microglobulin And Vesicular Stomatitis Virus Nucleoprotein
authors M.G.Rudolph, J.A.Speir, A.Brunmark, N.Mattsson, M.R.Jackson, P.A. L.Teyton, I.A.Wilson
compound source
Molecule: H-2 Class I Histocompatibility Antigen, K-B Alpha
Chain: A
Fragment: Extracellular Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227

Molecule: Nucleocapsid Protein
Chain: P
Fragment: Residues 52-59
Synonym: Vsv8
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Found Naturally In Vesicular Stomatitis V
symmetry Space Group: P 21 21 2
R_factor 0.204 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.910 88.350 45.270 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CSO, FUL, MPD, NAG, PO4 enzyme
related structures by homologous chain: 1HSB, 1WBX
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceThe crystal structures of K(bm1) and K(bm8) reveal that subtle changes in the peptide environment impact thermostability and alloreactivity., Rudolph MG, Speir JA, Brunmark A, Mattsson N, Jackson MR, Peterson PA, Teyton L, Wilson IA, Immunity 2001 Mar;14(3):231-42. PMID:11290333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1fzj.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (1fzj.pdb2.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 1FZJ
  • CSU: Contacts of Structural Units for 1FZJ
  • Likely Quarternary Molecular Structure file(s) for 1FZJ
  • Structure Factors (739 Kb)
  • Retrieve 1FZJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FZJ from S2C, [Save to disk]
  • Re-refined 1fzj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FZJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FZJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fzja2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1fzja1, region A:182-274 [Jmol] [rasmolscript] [script source]
        - Domain d1fzjb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fzj] [1fzj_A] [1fzj_B] [1fzj_P]
  • SWISS-PROT database: [P01887] [P01901] [P03521]
  • Domain organization of [B2MG_MOUSE] [HA1B_MOUSE] [NCAP_VSIVA] by SWISSPFAM
  • Domain found in 1FZJ: [IGc1 ] by SMART
  • Other resources with information on 1FZJ
  • Community annotation for 1FZJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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