1G00 Dna date Oct 05, 2000
title Alternation Of Dna And Solvent Layers In The A Form Of D(Ggc Obtained By Ethanol Crystallization
authors L.Urpi, J.Navaza, J.A.Subirana
compound source
Molecule: 5'-D(Gpgpcpgpcpc)-3'
Chain: A, B, C, D, E, F
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: C 2 2 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.149 36.900 110.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceAlternation of DNA and solvent layers in the A form of d(GGCGCC) obtained by ethanol crystallization., Urpi L, Navaza J, Subirana JA, J Biomol Struct Dyn 2000 Dec;18(3):363-9. PMID:11149513
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1g00.pdb1.gz) 5 Kb
  • Biological Unit Coordinates (1g00.pdb2.gz) 5 Kb
  • Biological Unit Coordinates (1g00.pdb3.gz) 4 Kb
  • CSU: Contacts of Structural Units for 1G00
  • Likely Quarternary Molecular Structure file(s) for 1G00
  • Structure Factors (26 Kb)
  • Retrieve 1G00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G00 from S2C, [Save to disk]
  • Re-refined 1g00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1G00 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1G00
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G00, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g00] [1g00_F] [1g00_D] [1g00_A] [1g00_B] [1g00_E] [1g00_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1G00
  • Community annotation for 1G00 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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