1G27	Hydrolase	date	Oct 17, 2000
title	Crystal Structure Of E.Coli Polypeptide Deformylase Complexe Inhibitor Bb-3497
authors	J.M.Clements, P.Beckett, A.Brown, C.Catlin, M.Lobell, S.Palan, W.T M.Whittaker, P.J.Baker, H.F.Rodgers, V.Barynin, D.W.Rice, M.G.Hu
compound		source
Molecule: Polypeptide Deformylase Chain: A, B, C Synonym: N-Formylmethionylaminoacyl-Trna Deformylase, Pdf, Ec: 3.5.1.31 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Def Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24-Pdf
symmetry	Space Group: C 1 2 1	R_factor 0.210 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 143.140 64.470 85.290 90.00 123.11 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	BB1, NI BindingDB	enzyme	Hydrolase E.C.3.5.1.31 BRENDA
related structures	by homologous chain: 1BS6, 1LRU
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Antibiotic activity and characterization of BB-3497, a novel peptide deformylase inhibitor., Clements JM, Beckett RP, Brown A, Catlin G, Lobell M, Palan S, Thomas W, Whittaker M, Wood S, Salama S, Baker PJ, Rodgers HF, Barynin V, Rice DW, Hunter MG, Antimicrob Agents Chemother 2001 Feb;45(2):563-70. PMID:11158755

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (1g27.pdb1.gz) 29 Kb Biological Unit Coordinates (1g27.pdb2.gz) 29 Kb Biological Unit Coordinates (1g27.pdb3.gz) 29 Kb LPC: Ligand-Protein Contacts for 1G27 CSU: Contacts of Structural Units for 1G27 Likely Quarternary Molecular Structure file(s) for 1G27 Retrieve 1G27 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1G27 from S2C, [Save to disk]

View 1G27 in 3D

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Visual 3D analysis of 1G27

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1G27, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1g27a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1g27b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1g27c_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1g27_A] [1g27_C] [1g27] [1g27_B] SWISS-PROT database: [P0A6K3] Domain organization of [DEF_ECOLI] by SWISSPFAM

Other resources with information on 1G27

Community annotation for 1G27 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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