1G2F Transcription Dna date Oct 18, 2000
title Structure Of A Cys2his2 Zinc Fingertata Box Complex (Tatazf
authors S.A.Wolfe, R.A.Grant, M.Elrod-Erickson, C.O.Pabo
compound source
Molecule: 5'-D(Gpapcpgpcptpaptpapapapapgpgpa
Chain: A, D
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Tpcpcptptptptpaptpapgpcpgptpc
Chain: B, E
Engineered: Yes

Synthetic: Yes

Molecule: Tata Box Zinc Finger Protein
Chain: C, F
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
Other_details: Protein Selected By Phage Display
symmetry Space Group: P 64
R_factor 0.233 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.800 104.800 104.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand ZN enzyme
related structures by homologous chain: 1A1J, 1ZAA
Primary referenceBeyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes., Wolfe SA, Grant RA, Elrod-Erickson M, Pabo CO, Structure (Camb) 2001 Aug;9(8):717-23. PMID:11587646
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1g2f.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (1g2f.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1G2F
  • CSU: Contacts of Structural Units for 1G2F
  • Likely Quarternary Molecular Structure file(s) for 1G2F
  • Retrieve 1G2F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G2F from S2C, [Save to disk]
  • View 1G2F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G2F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G2F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g2fc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1g2ff_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g2f_E] [1g2f_A] [1g2f_B] [1g2f] [1g2f_D] [1g2f_F] [1g2f_C]
  • SWISS-PROT database: [P08046]
  • Domain organization of [EGR1_MOUSE] by SWISSPFAM
  • Domain found in 1G2F: [ZnF_C2H2 ] by SMART
  • Other resources with information on 1G2F
  • Community annotation for 1G2F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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