1G37 Hydrolase Hydrolase Inhibitor date Oct 23, 2000
title Crystal Structure Of Human Alpha-Thrombin Complexed With Bch Exosite-Directed Peptide
authors B.Bachand, M.Tarazi, Y.St-Denis, J.J.Edmunds, P.D.Winocour, L.Leb M.A.Siddiqui
compound source
Molecule: Alpha Thrombin
Chain: A
Synonym: Coagulation Factor II
Ec: 3.4.21.5
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Other_details: Thrombin Purchased From Haematologic Technol

Molecule: Thrombin Nonapeptide Inhibitor
Chain: B
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.450 72.030 73.150 90.00 100.71 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 110 enzyme Hydrolase E.C.3.4.21.5 BRENDA
related structures by homologous chain: 1DE7, 1Z8I
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePotent and selective bicyclic lactam inhibitors of thrombin. Part 4: transition state inhibitors., Bachand B, Tarazi M, St-Denis Y, Edmunds JJ, Winocour PD, Leblond L, Siddiqui MA, Bioorg Med Chem Lett 2001 Feb 12;11(3):287-90. PMID:11212093
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1g37.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1G37
  • CSU: Contacts of Structural Units for 1G37
  • Likely Quarternary Molecular Structure file(s) for 1G37
  • Retrieve 1G37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G37 from S2C, [Save to disk]
  • View 1G37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G37
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G37, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g37a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g37_A] [1g37] [1g37_B]
  • SWISS-PROT database: [P00734]
  • Domain organization of [THRB_HUMAN] by SWISSPFAM
  • Domain found in 1G37: [Tryp_SPc ] by SMART
  • Other resources with information on 1G37
  • Community annotation for 1G37 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science