1G5S Cell Cycle Transferase date Nov 02, 2000
title Crystal Structure Of Human Cyclin Dependent Kinase 2 (Cdk2) With The Inhibitor H717
authors M.K.Dreyer, D.R.Borcherding, J.A.Dumont, N.P.Peet, J.T.Tsay, P.S. A.J.Bitonti, J.Shen, S.H.Kim
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus Sf9
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.180 72.840 73.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.61 Å
ligand I17 enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1GY3, 2BHH
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of human cyclin-dependent kinase 2 in complex with the adenine-derived inhibitor H717., Dreyer MK, Borcherding DR, Dumont JA, Peet NP, Tsay JT, Wright PS, Bitonti AJ, Shen J, Kim SH, J Med Chem 2001 Feb 15;44(4):524-30. PMID:11170642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1g5s.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1G5S
  • CSU: Contacts of Structural Units for 1G5S
  • Likely Quarternary Molecular Structure file(s) for 1G5S
  • Retrieve 1G5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G5S from S2C, [Save to disk]
  • View 1G5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G5S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G5S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g5sa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g5s] [1g5s_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1G5S: [S_TKc ] by SMART
  • Other resources with information on 1G5S
  • Community annotation for 1G5S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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