1G6D STRUCTURE OF PEPTIDYL-D(CGCAATTGCG) IN THE PRESENCE OF ZINC IONS date
authors Soler-Lopez, M., Malinina, L., Tereshko, V., Zarytova, V., Subirana, J.A.
compound source
symmetry
R_factor
R_Free 0.2134000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand ZN enzyme
Primary referenceInteraction of zinc ions with d(CGCAATTGCG) in a 2.9 A resolution X-ray structure., Soler-Lopez M, Malinina L, Tereshko V, Zarytova V, Subirana JA, J Biol Inorg Chem 2002 Apr;7(4-5):533-8. PMID:11941511
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (1g6d.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1G6D
  • CSU: Contacts of Structural Units for 1G6D
  • Likely Quarternary Molecular Structure file(s) for 1G6D
  • Retrieve 1G6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G6D from S2C, [Save to disk]
  • View 1G6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G6D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G6D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g6d_A] [1g6d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1G6D
  • Community annotation for 1G6D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
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