1G6H Transport Protein date Nov 06, 2000
title Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Cassette Of An Abc Transporter
authors Y.R.Yuan, O.Martsinkevich, N.Karpowich, L.Millen, P.J.Thomas, J.
compound source
Molecule: High-Affinity Branched-Chain Amino Acid Transport Binding Protein;
Chain: A
Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 2190
symmetry Space Group: C 1 2 1
R_factor 0.217 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.807 60.463 42.730 90.00 92.16 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ADP, MG, MMC enzyme
related structures by homologous chain: 1GAJ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the MJ1267 ATP binding cassette reveal an induced-fit effect at the ATPase active site of an ABC transporter., Karpowich N, Martsinkevich O, Millen L, Yuan YR, Dai PL, MacVey K, Thomas PJ, Hunt JF, Structure (Camb) 2001 Jul 3;9(7):571-86. PMID:11470432
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1g6h.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1G6H
  • CSU: Contacts of Structural Units for 1G6H
  • Likely Quarternary Molecular Structure file(s) for 1G6H
  • Structure Factors (458 Kb)
  • Retrieve 1G6H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G6H from S2C, [Save to disk]
  • Re-refined 1g6h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1G6H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G6H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G6H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g6ha_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g6h_A] [1g6h]
  • SWISS-PROT database: [Q58663]
  • Domain organization of [LIVG_METJA] by SWISSPFAM
  • Domain found in 1G6H: [AAA ] by SMART
  • Other resources with information on 1G6H
  • Community annotation for 1G6H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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