1G6W	Structural Genomics	date	Nov 08, 2000
title	Crystal Structure Of The Globular Region Of The Prion Protei From The Yeast Saccaromyces Cerevisiae
authors	L.Bousset, H.Belrhali, J.Janin, R.Melki, S.Morera
compound		source
Molecule: Ure2 Protein Chain: A, B, C, D Fragment: Globular Domain (Residues 94-354) Synonym: Ure2p Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Ure2 Or Ynl229c Or N1165 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21de3 Expression_system_plasmid: Pet3
symmetry	Space Group: P 21 21 21	R_factor 0.210 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.680 125.020 159.950 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
related structures	by homologous chain: 1K0B, 1K0C
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure of the globular region of the prion protein Ure2 from the yeast Saccharomyces cerevisiae., Bousset L, Belrhali H, Janin J, Melki R, Morera S, Structure (Camb) 2001 Jan 10;9(1):39-46. PMID:11342133

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk] Biological Unit Coordinates (1g6w.pdb1.gz) 80 Kb Biological Unit Coordinates (1g6w.pdb2.gz) 86 Kb CSU: Contacts of Structural Units for 1G6W Likely Quarternary Molecular Structure file(s) for 1G6W Structure Factors (308 Kb) Retrieve 1G6W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1G6W from S2C, [Save to disk] Re-refined 1g6w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1G6W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1G6W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1G6W, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1g6wa2, region A:100-200 [Jmol] [rasmolscript] [script source]     - Domain d1g6wa1, region A:201-353 [Jmol] [rasmolscript] [script source]     - Domain d1g6wb1, region B:201-353 [Jmol] [rasmolscript] [script source]     - Domain d1g6wb2, region B:97-200 [Jmol] [rasmolscript] [script source]     - Domain d1g6wc2, region C:100-200 [Jmol] [rasmolscript] [script source]     - Domain d1g6wc1, region C:201-354 [Jmol] [rasmolscript] [script source]     - Domain d1g6wd1, region D:201-354 [Jmol] [rasmolscript] [script source]     - Domain d1g6wd2, region D:96-200 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1g6w_B] [1g6w_C] [1g6w] [1g6w_D] [1g6w_A] SWISS-PROT database: [P23202] Domain organization of [URE2_YEAST] by SWISSPFAM

Other resources with information on 1G6W

Community annotation for 1G6W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---