1G7C Translation date Nov 10, 2000
title Yeast Eef1a:Eef1ba In Complex With Gdpnp
authors G.R.Andersen, L.Valente, L.Pedersen, T.G.Kinzy, J.Nyborg
compound source
Molecule: Elongation Factor 1-Alpha
Chain: A
Synonym: Eef1a
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Elongation Factor 1-Beta
Chain: B
Fragment: C-Terminal Domain
Synonym: Eef1ba
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Tky331
Gene: Tef5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 834 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11d
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.641 90.433 92.413 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand 5GP enzyme
related structures by homologous chain: 1F60, 1IJE
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structures of nucleotide exchange intermediates in the eEF1A-eEF1Balpha complex., Andersen GR, Valente L, Pedersen L, Kinzy TG, Nyborg J, Nat Struct Biol 2001 Jun;8(6):531-4. PMID:11373622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1g7c.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 1G7C
  • CSU: Contacts of Structural Units for 1G7C
  • Likely Quarternary Molecular Structure file(s) for 1G7C
  • Structure Factors (282 Kb)
  • Retrieve 1G7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G7C from S2C, [Save to disk]
  • Re-refined 1g7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1G7C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G7C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G7C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g7ca1, region A:241-334 [Jmol] [rasmolscript] [script source]
        - Domain d1g7ca2, region A:335-443 [Jmol] [rasmolscript] [script source]
        - Domain d1g7ca3, region A:4-240 [Jmol] [rasmolscript] [script source]
        - Domain d1g7cb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g7c_A] [1g7c] [1g7c_B]
  • SWISS-PROT database: [P02994] [P32471]
  • Domain organization of [EF1A_YEAST] [EF1B_YEAST] by SWISSPFAM
  • Domain found in 1G7C: [EF1_GNE ] by SMART
  • Other resources with information on 1G7C
  • Community annotation for 1G7C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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