1G83 Transferase date Nov 16, 2000
title Crystal Structure Of Fyn Sh3-Sh2
authors S.T.Arold, T.S.Ulmer, T.D.Mulhern, J.M.Werner, J.E.Ladbury, I.D.C M.E.M.Noble
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Fyn
Chain: A, B
Fragment: Sh3 And Sh2 Domain
Synonym: P59-Fyn
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fyn
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.970 89.960 60.270 90.00 101.44 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1BU1, 1EFN, 1SPS
Primary referenceThe role of the Src homology 3-Src homology 2 interface in the regulation of Src kinases., Arold ST, Ulmer TS, Mulhern TD, Werner JM, Ladbury JE, Campbell ID, Noble ME, J Biol Chem 2001 May 18;276(20):17199-205. PMID:11278857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1g83.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (1g83.pdb2.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1G83
  • Likely Quarternary Molecular Structure file(s) for 1G83
  • Structure Factors (80 Kb)
  • Retrieve 1G83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G83 from S2C, [Save to disk]
  • Re-refined 1g83 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1G83 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G83
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G83, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g83a2, region A:142-245 [Jmol] [rasmolscript] [script source]
        - Domain d1g83a1, region A:85-141 [Jmol] [rasmolscript] [script source]
        - Domain d1g83b2, region B:142-245 [Jmol] [rasmolscript] [script source]
        - Domain d1g83b1, region B:85-141 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g83] [1g83_A] [1g83_B]
  • SWISS-PROT database: [P06241]
  • Domain organization of [FYN_HUMAN] by SWISSPFAM
  • Domains found in 1G83: [SH2] [SH3 ] by SMART
  • Other resources with information on 1G83
  • Community annotation for 1G83 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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