1G8S Rna Binding Protein date Nov 20, 2000
title Methanococcus Jannaschii Fibrillarin Pre-Rrna Processing Pro
authors D.C.Boisvert, S.H.Kim
compound source
Molecule: Fibrillarin-Like Pre-Rrna Processing Protein
Chain: A
Engineered: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 2190
Gene: 0697
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: C 1 2 1
R_factor 0.201 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.152 43.212 55.197 90.00 96.98 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand MET enzyme
related structures by homologous chain: 1FBN
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1g8s.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1G8S
  • CSU: Contacts of Structural Units for 1G8S
  • Likely Quarternary Molecular Structure file(s) for 1G8S
  • Structure Factors (1103 Kb)
  • Retrieve 1G8S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G8S from S2C, [Save to disk]
  • Re-refined 1g8s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1G8S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1G8S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G8S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g8sa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g8s_A] [1g8s]
  • SWISS-PROT database: [Q58108]
  • Domain organization of [FLPA_METJA] by SWISSPFAM
  • Domain found in 1G8S: [Fibrillarin ] by SMART
    • Other resources with information on 1G8S
  • Community annotation for 1G8S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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