1G8V MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA date
authors Tsunoda, M., Karino, N., Ueno, Y., Matsuda, A., Takenaka, A.
compound source
symmetry
R_factor
R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand UFR enzyme
Primary referenceCrystallization and preliminary X-ray analysis of a DNA dodecamer containing 2'-deoxy-5-formyluridine; what is the role of magnesium cation in crystallization of Dickerson-type DNA dodecamers?, Tsunoda M, Karino N, Ueno Y, Matsuda A, Takenaka A, Acta Crystallogr D Biol Crystallogr 2001 Feb;57(Pt 2):345-8. PMID:11173500
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (1g8v.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1G8V
  • CSU: Contacts of Structural Units for 1G8V
  • Likely Quarternary Molecular Structure file(s) for 1G8V
  • Retrieve 1G8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G8V from S2C, [Save to disk]
  • View 1G8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G8V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G8V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g8v] [1g8v_B] [1g8v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1G8V
  • Community annotation for 1G8V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science