1G9E Immune System date Nov 23, 2000
title Solution Structure And Relaxation Measurements Of An Antigen Heavy Chain Variable Domain (Vhh) From Llama
authors J.G.Renisio, J.Perez, M.Czisch, M.Guenneugues, O.Bornet, L.Frenk C.Cambillau, H.Darbon
compound source
Molecule: H14
Chain: A
Engineered: Yes
Organism_scientific: Lama Glama
Organism_common: Llama
Organism_taxid: 9844
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
methodSolution NMR
related structures by homologous chain: 1QLE, 1VHP
Primary referenceSolution structure and backbone dynamics of an antigen-free heavy chain variable domain (VHH) from Llama., Renisio JG, Perez J, Czisch M, Guenneugues M, Bornet O, Frenken L, Cambillau C, Darbon H, Proteins 2002 Jun 1;47(4):546-55. PMID:12001233
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (572 Kb) [Save to disk]
  • Biological Unit Coordinates (1g9e.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1G9E
  • Original NMR restraints for 1G9E from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1G9E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G9E from S2C, [Save to disk]
  • View 1G9E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G9E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G9E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g9ea_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g9e] [1g9e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 1G9E: [IGv ] by SMART
  • Other resources with information on 1G9E
  • Community annotation for 1G9E at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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