1G9U	Toxin	date	Nov 28, 2000
title	Crystal Structure Of Yopm-Leucine Rich Effector Protein From Pestis
authors	A.G.Evdokimov, D.E.Anderson, K.M.Routzahn, D.S.Waugh
compound		source
Molecule: Outer Protein Yopm Chain: A Engineered: Yes		Organism_scientific: Yersinia Pestis Organism_taxid: 632 Gene: Yopm Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21de3 Expression_system_vector_type: Modified Pmal
symmetry	Space Group: P 42 2 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.359 109.359 101.499 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	ACT, CA, HG	enzyme
related structures	by homologous chain: 1JL5
Gene Ontology	Chain Function Process Component A
Primary reference	Unusual molecular architecture of the Yersinia pestis cytotoxin YopM: a leucine-rich repeat protein with the shortest repeating unit., Evdokimov AG, Anderson DE, Routzahn KM, Waugh DS, J Mol Biol 2001 Sep 28;312(4):807-21. PMID:11575934

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (1g9u.pdb1.gz) 243 Kb LPC: Ligand-Protein Contacts for 1G9U CSU: Contacts of Structural Units for 1G9U Likely Quarternary Molecular Structure file(s) for 1G9U Structure Factors (300 Kb) Retrieve 1G9U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1G9U from S2C, [Save to disk] Re-refined 1g9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1G9U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1G9U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1G9U, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1g9ua_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1g9u_A] [1g9u] SWISS-PROT database: [P17778] Domain organization of [YOPM_YERPE] by SWISSPFAM Domain found in 1G9U: [LRR ] by SMART

Other resources with information on 1G9U

Community annotation for 1G9U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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