1GD5 Protein Binding date Sep 14, 2000
title Solution Structure Of The Px Domain From Human P47phox Nadph
authors H.Hiroaki, T.Ago, T.Ito, H.Sumimoto, D.Kohda
compound source
Molecule: Neutrophil Cytosol Factor 1
Chain: A
Fragment: Px Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Lymphocyte
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex2t
methodSolution NMR
related structures by homologous chain: 1O7K
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the PX domain, a target of the SH3 domain., Hiroaki H, Ago T, Ito T, Sumimoto H, Kohda D, Nat Struct Biol 2001 Jun;8(6):526-30. PMID:11373621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (709 Kb) [Save to disk]
  • Biological Unit Coordinates (1gd5.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1GD5
  • Original NMR restraints for 1GD5 from PDB
  • Retrieve 1GD5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GD5 from S2C, [Save to disk]
  • View 1GD5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GD5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GD5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gd5a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gd5] [1gd5_A]
  • SWISS-PROT database: [P14598]
  • Domain organization of [NCF1_HUMAN] by SWISSPFAM
  • Domain found in 1GD5: [PX ] by SMART
  • Other resources with information on 1GD5
  • Community annotation for 1GD5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science