1GFH Hydrolase date Dec 04, 2000
title Crystal Structure Of Mutant Human Lysozyme Substituted At Th Positions
authors J.Funahashi, K.Takano, Y.Yamagata, K.Yutani
compound source
Molecule: Lysozyme
Chain: A
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peri8602
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.210 61.220 32.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1GF6, 2BQE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePositive contribution of hydration structure on the surface of human lysozyme to the conformational stability., Funahashi J, Takano K, Yamagata Y, Yutani K, J Biol Chem. 2002 Jun 14;277(24):21792-800. Epub 2002 Apr 1. PMID:11927576
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1gfh.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1GFH
  • CSU: Contacts of Structural Units for 1GFH
  • Likely Quarternary Molecular Structure file(s) for 1GFH
  • Retrieve 1GFH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GFH from S2C, [Save to disk]
  • View 1GFH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GFH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GFH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gfha_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gfh] [1gfh_A]
  • SWISS-PROT database: [P61626]
  • Domain organization of [LYSC_HUMAN] by SWISSPFAM
  • Domain found in 1GFH: [LYZ1 ] by SMART
  • Other resources with information on 1GFH
  • Community annotation for 1GFH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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