1GGL Transport Protein date Aug 23, 2000
title Human Cellular Retinol Binding Protein III
authors V.Calderone, G.Zanotti, C.Folli, S.Ottonello, A.Bolchi, M.Stoppin
compound source
Molecule: Protein (Cellular Retinol-Binding Protein III)
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Liver
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21
Expression_system_variant: De3
Expression_system_collection: Atcc 454664
Expression_system_plasmid: Pgem
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.514 59.841 68.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification, retinoid binding, and x-ray analysis of a human retinol-binding protein., Folli C, Calderone V, Ottonello S, Bolchi A, Zanotti G, Stoppini M, Berni R, Proc Natl Acad Sci U S A 2001 Mar 27;98(7):3710-5. PMID:11274389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1ggl.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (1ggl.pdb2.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1GGL
  • Likely Quarternary Molecular Structure file(s) for 1GGL
  • Retrieve 1GGL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GGL from S2C, [Save to disk]
  • View 1GGL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GGL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GGL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ggla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gglb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ggl_A] [1ggl_B] [1ggl]
  • SWISS-PROT database: [P82980]
  • Domain organization of [RET5_HUMAN] by SWISSPFAM
  • Other resources with information on 1GGL
  • Community annotation for 1GGL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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