1GGO	Transferase	date	Aug 29, 2000
title	T453a Mutant Of Pyruvate, Phosphate Dikinase
authors	Z.Li, O.Herzberg
compound		source
Molecule: Protein (Pyruvate, Phosphate Dikinase) Chain: A Synonym: Ppdk Ec: 2.7.9.1 Engineered: Yes Mutation: Yes		Organism_scientific: Clostridium Symbiosum Organism_taxid: 1512 Strain: Jm 101 Gene: Ppdk Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm 101 Expression_system_plasmid: Pacyc184d-12 Expression_system_gene: Ppdk
symmetry	Space Group: P 1 2 1	R_factor 0.177 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.730 58.660 102.780 90.00 95.58 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	SO4	enzyme	Transferase E.C.2.7.9.1 BRENDA
related structures	by homologous chain: 1JDE, 2DIK
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of domain-domain docking sites within Clostridium symbiosum pyruvate phosphate dikinase by amino acid replacement., Wei M, Li Z, Ye D, Herzberg O, Dunaway-Mariano D, J Biol Chem 2000 Dec 29;275(52):41156-65. PMID:10995759

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk] Biological Unit Coordinates (1ggo.pdb1.gz) 273 Kb Biological Unit Coordinates (1ggo.pdb2.gz) 272 Kb LPC: Ligand-Protein Contacts for 1GGO CSU: Contacts of Structural Units for 1GGO Likely Quarternary Molecular Structure file(s) for 1GGO Retrieve 1GGO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GGO from S2C, [Save to disk]

View 1GGO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GGO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GGO, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ggoa3, region A:2-376 [Jmol] [rasmolscript] [script source]     - Domain d1ggoa2, region A:377-505 [Jmol] [rasmolscript] [script source]     - Domain d1ggoa1, region A:510-874 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ggo] [1ggo_A] SWISS-PROT database: [P22983] Domain organization of [PPDK_CLOSY] by SWISSPFAM

Other resources with information on 1GGO

Community annotation for 1GGO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---