1GH8 Gene Regulation date Nov 30, 2000
title Solution Structure Of The Archaeal Translation Elongation Fa From Methanobacterium Thermoautotrophicum
authors G.Kozlov, I.Ekiel, K.Gehring, Northeast Structural Genomics Con (Nesg)
compound source
Molecule: Translation Elongation Factor 1beta
Chain: A
Engineered: Yes
 Organism_scientific: Methanothermobacter Thermautotrophicus
Organism_taxid: 145262
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 1GH8 supersedes 1D5K
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRapid fold and structure determination of the archaeal translation elongation factor 1beta from Methanobacterium thermoautotrophicum., Kozlov G, Ekiel I, Beglova N, Yee A, Dharamsi A, Engel A, Siddiqui N, Nong A, Gehring K, J Biomol NMR 2000 Jul;17(3):187-94. PMID:10959626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (647 Kb) [Save to disk]
  • Biological Unit Coordinates (1gh8.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1GH8
  • Original NMR restraints for 1GH8 from PDB
  • Retrieve 1GH8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GH8 from S2C, [Save to disk]
    • View 1GH8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GH8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GH8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gh8a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gh8] [1gh8_A]
  • SWISS-PROT database: [O27734]
  • Domain organization of [EF1B_METTH] by SWISSPFAM
  • Domain found in 1GH8: [EF1_GNE ] by SMART
    • Other resources with information on 1GH8
  • Community annotation for 1GH8 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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