1GID CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING date
authors Cate, J.H., Gooding, A.R., Podell, E., Zhou, K., Golden, B.L., Kundrot, C.E., Cech, T.R., Doudna, J.A.
compound source
symmetry
R_factor
R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand MG, NCO enzyme
Primary referenceCrystal structure of a group I ribozyme domain: principles of RNA packing., Cate JH, Gooding AR, Podell E, Zhou K, Golden BL, Kundrot CE, Cech TR, Doudna JA, Science 1996 Sep 20;273(5282):1678-85. PMID:8781224
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (1gid.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (1gid.pdb2.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 1GID
  • CSU: Contacts of Structural Units for 1GID
  • Likely Quarternary Molecular Structure file(s) for 1GID
  • Retrieve 1GID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GID from S2C, [Save to disk]
    • View 1GID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GID
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GID, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gid_B] [1gid] [1gid_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1GID
  • Community annotation for 1GID at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1GID from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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