1GJ6 Hydrolase date Apr 27, 2001
title Engineering Inhibitors Highly Selective For The S1 Sites Of Trypsin-Like Serine Protease Drug Targets
authors B.A.Katz, P.A.Sprengeler, C.Luong, E.Verner, J.R.Spencer, J.G.Breitenbucher, H.Hui, D.Mcgee, D.Allen, A.Martelli, R.L.Mack
compound source
Molecule: Beta-Trypsin
Chain: A
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.720 63.080 69.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand 132, CA BindingDB enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1UTM, 2BTC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering inhibitors highly selective for the S1 sites of Ser190 trypsin-like serine protease drug targets., Katz BA, Sprengeler PA, Luong C, Verner E, Elrod K, Kirtley M, Janc J, Spencer JR, Breitenbucher JG, Hui H, McGee D, Allen D, Martelli A, Mackman RL, Chem Biol 2001 Nov;8(11):1107-21. PMID:11731301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (1gj6.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 1GJ6
  • CSU: Contacts of Structural Units for 1GJ6
  • Likely Quarternary Molecular Structure file(s) for 1GJ6
  • Structure Factors (190 Kb)
  • Retrieve 1GJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GJ6 from S2C, [Save to disk]
  • Re-refined 1gj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GJ6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1GJ6 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GJ6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gj6a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gj6_A] [1gj6]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1GJ6: [Tryp_SPc ] by SMART
  • Other resources with information on 1GJ6
  • Community annotation for 1GJ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science