1GJV	Transferase	date	Aug 03, 2001
title	Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck) Com Atp-Gamma-S
authors	M.Machius, J.L.Chuang, M.R.Wynn, D.R.Tomchick, D.T.Chuang
compound		source
Molecule: [3-Methyl-2-Oxobutanoate Dehydrogenase [Lipoamide Chain: A Synonym: Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase Ec: 2.7.1.115 Engineered: Yes Other_details: C-Terminal His6-Tag		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Cg-712 Expression_system_vector: Ptrchisb Expression_system_plasmid: Ptrckinasehis6pgroesl
symmetry	Space Group: P 42 21 2	R_factor 0.218 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 127.722 127.722 74.314 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	AGS, CL, K, MG	enzyme	Transferase E.C.2.7.1.115 BRENDA
related structures	by homologous chain: 1GKX
Gene Ontology	Chain Function Process Component A protein kinase activity protein serine/threonine kin... [3-methyl-2-oxobutanoate deh...
Primary reference	Structure of rat BCKD kinase: nucleotide-induced domain communication in a mitochondrial protein kinase., Machius M, Chuang JL, Wynn RM, Tomchick DR, Chuang DT, Proc Natl Acad Sci U S A 2001 Sep 25;98(20):11218-23. PMID:11562470

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (1gjv.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 1GJV CSU: Contacts of Structural Units for 1GJV Likely Quarternary Molecular Structure file(s) for 1GJV Structure Factors (153 Kb) Retrieve 1GJV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GJV from S2C, [Save to disk] Re-refined 1gjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GJV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GJV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GJV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gjva2, region A:186-378 [Jmol] [rasmolscript] [script source]     - Domain d1gjva1, region A:38-185 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gjv_A] [1gjv] SWISS-PROT database: [Q00972] Domain organization of [BCKD_RAT] by SWISSPFAM Domain found in 1GJV: [HATPase_c ] by SMART

Other resources with information on 1GJV

Community annotation for 1GJV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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