1GMI Kinase date Sep 14, 2001
title Structure Of The C2 Domain From Novel Protein Kinase C Epsilon
authors W.F.Ochoa, J.Garcia-Garcia, I.Fita, S.Corbalan-Garcia, N.Verdaguer, J.C.Gomez-Fernandez
compound source
Molecule: Protein Kinase C, Epsilon Type
Chain: A
Fragment: C2 Domain
Synonym: Protein Kinase C, Npkc-Epsilon
Engineered: Yes
 Organism_scientific: Rattus Rattus
Organism_common: Rat
Organism_taxid: 10117
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.300 56.500 60.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.7 Å
ligand MG enzyme
Primary referenceStructure of the C2 domain from novel protein kinase Cepsilon. A membrane binding model for Ca(2+)-independent C2 domains., Ochoa WF, Garcia-Garcia J, Fita I, Corbalan-Garcia S, Verdaguer N, Gomez-Fernandez JC, J Mol Biol 2001 Aug 24;311(4):837-49. PMID:11518534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1gmi.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1GMI
  • CSU: Contacts of Structural Units for 1GMI
  • Likely Quarternary Molecular Structure file(s) for 1GMI
  • Structure Factors (113 Kb)
  • Retrieve 1GMI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GMI from S2C, [Save to disk]
  • Re-refined 1gmi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1GMI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GMI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GMI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gmia_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gmi] [1gmi_A]
  • SWISS-PROT database: [P09216]
  • Domain organization of [KPCE_RAT] by SWISSPFAM
  • Domain found in 1GMI: [C2 ] by SMART
    • Other resources with information on 1GMI
  • Community annotation for 1GMI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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