1GQ6 Hydrolase date Nov 20, 2001
title Proclavaminate Amidino Hydrolase From Streptomyces Clavuligerus
authors J.M.Elkins, I.J.Clifton, H.Hernandez, C.V.Robinson, C.J.Schofiel K.S.Hewitson
compound source
Molecule: Proclavaminate Amidino Hydrolase
Chain: A, B, C
Synonym: Proclavaminate Amidino Hydrolase Ureohydrolase
Ec: 3.5.3.11
Engineered: Yes
Organism_scientific: Streptomyces Clavuligerus
Organism_taxid: 1901
Atcc: 27064
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet24a(+)
symmetry Space Group: C 1 2 1
R_factor 0.142 R_Free 0.170
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.859 78.931 93.199 90.00 123.90 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand MN enzyme Hydrolase E.C.3.5.3.11 BRENDA
related structures by homologous chain: 1GQ7
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceOligomeric structure of proclavaminic acid amidino hydrolase: evolution of a hydrolytic enzyme in clavulanic acid biosynthesis., Elkins JM, Clifton IJ, Hernandez H, Doan LX, Robinson CV, Schofield CJ, Hewitson KS, Biochem J 2002 Sep 1;366(Pt 2):423-34. PMID:12020346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (1gq6.pdb1.gz) 278 Kb
  • LPC: Ligand-Protein Contacts for 1GQ6
  • CSU: Contacts of Structural Units for 1GQ6
  • Likely Quarternary Molecular Structure file(s) for 1GQ6
  • Structure Factors (632 Kb)
  • Retrieve 1GQ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GQ6 from S2C, [Save to disk]
  • Re-refined 1gq6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GQ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GQ6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GQ6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gq6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gq6b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1gq6c_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gq6_C] [1gq6_B] [1gq6_A] [1gq6]
  • SWISS-PROT database: [P37819]
  • Domain organization of [PAH_STRCL] by SWISSPFAM
  • Other resources with information on 1GQ6
  • Community annotation for 1GQ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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