1GSO	Ligase	date	Sep 08, 1998
title	Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E. Coli
authors	W.Wang, T.J.Kappock, J.Stubbe, S.E.Ealick
compound		source
Molecule: Protein (Glycinamide Ribonucleotide Synthetase) Chain: A Synonym: Purd Gen Product Ec: 6.3.4.13 Mutation: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Strain: Tx635 Cell_line: B834(De3)
symmetry	Space Group: P 21 21 21	R_factor 0.209 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.220 62.420 129.770 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand		enzyme	Ligase E.C.6.3.4.13 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	X-ray crystal structure of glycinamide ribonucleotide synthetase from Escherichia coli., Wang W, Kappock TJ, Stubbe J, Ealick SE, Biochemistry 1998 Nov 10;37(45):15647-62. PMID:9843369

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (1gso.pdb1.gz) 70 Kb CSU: Contacts of Structural Units for 1GSO Likely Quarternary Molecular Structure file(s) for 1GSO Structure Factors (402 Kb) Retrieve 1GSO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GSO from S2C, [Save to disk] Re-refined 1gso structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GSO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GSO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GSO, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gsoa2, region A:-2-103 [Jmol] [rasmolscript] [script source]     - Domain d1gsoa3, region A:104-327 [Jmol] [rasmolscript] [script source]     - Domain d1gsoa1, region A:328-426 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gso_A] [1gso] SWISS-PROT database: [P15640] Domain organization of [PUR2_ECOLI] by SWISSPFAM Domains found in 1GSO: [GARS_A] [GARS_C ] by SMART

Other resources with information on 1GSO

Community annotation for 1GSO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---