1GTN Rna Binding Protein Rna date Jan 16, 2002
title Structure Of The Trp Rna-Binding Attenuation Protein (Trap) An Rna Molecule Containing 11 Gagcc Repeats
authors N.H.Hopcroft, A.L.Wendt, P.Gollnick, A.A.Antson
compound source
Molecule: Trp Rna-Binding Attenuation Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V;
Engineered: Yes
Other_details: The Structure Contains 2 11-Mer Molecules (C K And L To V), (Residues 1-75) (Some N- And C-Terminal Resi Missing Due To Disorder);
Organism_scientific: Bacillus Stearothermophilus
Organism_taxid: 1422
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg62052pgp1-2
Expression_system_plasmid: Ptzstmtrb

Molecule: (Gagcc)11g 56-Nucleotide Rna
Chain: W
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.235 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.839 111.722 138.715 90.00 117.78 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand TRP enzyme
related structures by homologous chain: 1QAW
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, P, B, H, D, R, I, G, U


Primary referenceSpecificity of TRAP-RNA interactions: crystal structures of two complexes with different RNA sequences., Hopcroft NH, Wendt AL, Gollnick P, Antson AA, Acta Crystallogr D Biol Crystallogr 2002 Apr;58(Pt 4):615-21. PMID:11914485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (1gtn.pdb1.gz) 119 Kb
  • Biological Unit Coordinates (1gtn.pdb2.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 1GTN
  • CSU: Contacts of Structural Units for 1GTN
  • Likely Quarternary Molecular Structure file(s) for 1GTN
  • Structure Factors (624 Kb)
  • Retrieve 1GTN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GTN from S2C, [Save to disk]
  • Re-refined 1gtn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GTN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GTN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GTN, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gtna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gtnb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1gtnc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1gtnd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1gtne_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1gtnf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1gtng_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1gtnh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1gtni_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1gtnj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1gtnk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1gtnl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1gtnm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1gtnn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1gtno_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1gtnp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1gtnq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1gtnr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1gtns_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1gtnt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1gtnu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1gtnv_, region V [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gtn_S] [1gtn_T] [1gtn_N] [1gtn_J] [1gtn_A] [1gtn_F] [1gtn_H] [1gtn_D] [1gtn_B] [1gtn_V] [1gtn_K] [1gtn_P] [1gtn_C] [1gtn_W] [1gtn_M] [1gtn_L] [1gtn] [1gtn_Q] [1gtn_G] [1gtn_E] [1gtn_R] [1gtn_O] [1gtn_U] [1gtn_I]
  • SWISS-PROT database: [Q9X6J6]
  • Domain organization of [MTRB_BACST] by SWISSPFAM
  • Other resources with information on 1GTN
  • Community annotation for 1GTN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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