1GU3 Carbohydrate-Binding Module date Jan 22, 2002
title Cbm4 Structure And Function
authors D.Nurizzo, V.Notenboom, G.J.Davies
compound source
Molecule: Endoglucanase C
Chain: A
Fragment: Carbohydrate Binding Module Family 4, Residues 1-
Synonym: Endo-1,4-Beta-Glucanase, Cellulase C, Cellulase 9b
Ec: 3.2.1.4
Engineered: Yes
Organism_scientific: Cellulomonas Fimi
Organism_taxid: 1708
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm101
Expression_system_plasmid: Ptug
Other_details: Carbohydrate Binding Module Of Cellulase 9b Cellulomonas Fimi
symmetry Space Group: P 31 2 1
R_factor 0.209 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.634 77.634 55.630 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand BGC enzyme Hydrolase E.C.3.2.1.4 BRENDA
related structures by homologous chain: 1ULO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDifferential oligosaccharide recognition by evolutionarily-related beta-1,4 and beta-1,3 glucan-binding modules., Boraston AB, Nurizzo D, Notenboom V, Ducros V, Rose DR, Kilburn DG, Davies GJ, J Mol Biol 2002 Jun 21;319(5):1143-56. PMID:12079353
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1gu3.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1GU3
  • CSU: Contacts of Structural Units for 1GU3
  • Likely Quarternary Molecular Structure file(s) for 1GU3
  • Structure Factors (60 Kb)
  • Retrieve 1GU3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GU3 from S2C, [Save to disk]
  • Re-refined 1gu3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GU3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GU3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GU3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gu3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gu3_A] [1gu3]
  • SWISS-PROT database: [P14090]
  • Domain organization of [GUNC_CELFI] by SWISSPFAM
  • Other resources with information on 1GU3
  • Community annotation for 1GU3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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