1GUB Sugar Binding Protein date Jan 24, 2002
title Hinge-Bending Motion Of D-Allose Binding Protein From Escher Coli: Three Open Conformations
authors U.Magnusson, B.N.Chaudhuri, J.Ko, C.Park, T.A.Jones, S.L.Mowbray
compound source
Molecule: D-Allose-Binding Periplasmic Protein
Chain: A
Synonym: Albp
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
symmetry Space Group: P 4 3 2
R_factor 0.280 R_Free 0.339
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.100 133.100 133.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of D-allose binding protein from Escherichia coli bound to D-allose at 1.8 A resolution., Chaudhuri BN, Ko J, Park C, Jones TA, Mowbray SL, J Mol Biol 1999 Mar 12;286(5):1519-31. PMID:10064713
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1gub.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1GUB
  • CSU: Contacts of Structural Units for 1GUB
  • Likely Quarternary Molecular Structure file(s) for 1GUB
  • Structure Factors (66 Kb)
  • Retrieve 1GUB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GUB from S2C, [Save to disk]
  • Re-refined 1gub structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1GUB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GUB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GUB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1guba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gub] [1gub_A]
  • SWISS-PROT database: [P39265]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [ALSB_ECOLI] by SWISSPFAM
    • Other resources with information on 1GUB
  • Community annotation for 1GUB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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