1GV6 Solution structure of alfa-L-LNA:DNA duplex date
authors Nielsen, K.M.E., Petersen, M., Haakansson, A.E., Wengel, J., Jacobsen, J.P.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
ligand ATL enzyme
Primary referencealpha-L-LNA (alpha-L-ribo configured locked nucleic acid) recognition of DNA: an NMR spectroscopic study., Nielsen KM, Petersen M, Hakansson AE, Wengel J, Jacobsen JP, Chemistry 2002 Jul 2;8(13):3001-9. PMID:12489231
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1GV6
  • CSU: Contacts of Structural Units for 1GV6
  • Retrieve 1GV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GV6 from S2C, [Save to disk]
    • View 1GV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GV6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GV6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gv6_B] [1gv6_A] [1gv6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1GV6
  • Community annotation for 1GV6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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