1GVO	Oxidoreductase	date	Feb 22, 2002
title	Structure Of Pentaerythritol Tetranitrate Reductase And Comp 2,4 Dinitrophenol
authors	T.Barna, P.C.E.Moody
compound		source
Molecule: Pentaerythritol Tetranitrate Reductase Chain: A Engineered: Yes Other_details: 2,4 Dinitrophenol Is Bound In The Active Sit		Organism_scientific: Enterobacter Cloacae Organism_taxid: 550 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 Expression_system_plasmid: Ponr1 Other_details: Ncbi U68759. Recombinant
symmetry	Space Group: P 21 21 21	R_factor 0.175 R_Free 0.200
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.963 69.094 89.024 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.38 Å
ligand	DNF, FMN	enzyme
related structures	by homologous chain: 1GVR, 1H61
Gene Ontology	Chain Function Process Component A
Primary reference	Kinetic and structural basis of reactivity of pentaerythritol tetranitrate reductase with NADPH, 2-cyclohexenone, nitroesters, and nitroaromatic explosives., Khan H, Harris RJ, Barna T, Craig DH, Bruce NC, Munro AW, Moody PC, Scrutton NS, J Biol Chem 2002 Jun 14;277(24):21906-12. Epub 2002 Mar 28. PMID:11923299

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (1gvo.pdb1.gz) 71 Kb LPC: Ligand-Protein Contacts for 1GVO CSU: Contacts of Structural Units for 1GVO Likely Quarternary Molecular Structure file(s) for 1GVO Structure Factors (485 Kb) Retrieve 1GVO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GVO from S2C, [Save to disk] Re-refined 1gvo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GVO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GVO

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1GVO from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GVO, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gvoa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gvo_A] [1gvo] SWISS-PROT database: [P71278] Domain organization of [P71278_ENTCL] by SWISSPFAM

Other resources with information on 1GVO

Community annotation for 1GVO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---