1GX0 Transferase date Mar 26, 2002
title Alpha-,1,3 Galactosyltransferase - Beta-D-Galactose Complex
authors E.Boix, Y.Zhang, G.J.Swaminathan, K.Brew, K.R.Acharya
compound source
Molecule: N-Acetyllactosaminide Alpha-1,3-Galactosyltransfe
Chain: A, B
Fragment: Catalytic Domain, Residues 80-368
Synonym: Galactosyltransferase, Udp-Galactose\: Beta-D-Gala 4-N-Acetyl-D-Glucosaminide Alpha-1,3-Galactosyltransferase;
Ec: 2.4.1.151
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 668369
Expression_system_variant: Dh5[Alpha]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psv-Sport
symmetry Space Group: P 1 21 1
R_factor 0.189 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.059 94.277 94.364 90.00 99.09 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GAL, GOL, MN, UDP enzyme Transferase E.C.2.4.1.151 BRENDA
related structures by homologous chain: 1GWW, 1K4V
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of ordered binding of donor and acceptor substrates to the retaining glycosyltransferase, alpha-1,3-galactosyltransferase., Boix E, Zhang Y, Swaminathan GJ, Brew K, Acharya KR, J Biol Chem 2002 Aug 2;277(31):28310-8. Epub 2002 May 14. PMID:12011052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (1gx0.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (1gx0.pdb2.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1GX0
  • CSU: Contacts of Structural Units for 1GX0
  • Likely Quarternary Molecular Structure file(s) for 1GX0
  • Structure Factors (492 Kb)
  • Retrieve 1GX0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GX0 from S2C, [Save to disk]
  • Re-refined 1gx0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GX0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GX0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GX0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gx0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gx0b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gx0_B] [1gx0] [1gx0_A]
  • SWISS-PROT database: [P14769]
  • Domain organization of [GGTA1_BOVIN] by SWISSPFAM
  • Other resources with information on 1GX0
  • Community annotation for 1GX0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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