1GZ0	Transferase	date	May 03, 2002
title	23s Ribosomal Rna G2251 2'O-Methyltransferase Rlmb
authors	G.Michel, M.Cygler
compound		source
Molecule: Hypothetical Trnarrna Methyltransferase Yjfh Chain: A, B, C, D, E, F, G, H Synonym: Methyltransferase Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Strain: Mc1061 P3 Atcc: 47035 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dl41(De3) Expression_system_plasmid: Pet15b
symmetry	Space Group: P 1 21 1	R_factor 0.231 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.478 132.288 90.710 90.00 96.40 90.00
method	X-Ray Diffraction	resolution	2.5 Å
ligand	MSE	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	The structure of the RlmB 23S rRNA methyltransferase reveals a new methyltransferase fold with a unique knot., Michel G, Sauve V, Larocque R, Li Y, Matte A, Cygler M, Structure (Camb) 2002 Oct;10(10):1303-15. PMID:12377117

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk] Biological Unit Coordinates (1gz0.pdb1.gz) 82 Kb Biological Unit Coordinates (1gz0.pdb2.gz) 68 Kb Biological Unit Coordinates (1gz0.pdb3.gz) 81 Kb Biological Unit Coordinates (1gz0.pdb4.gz) 69 Kb LPC: Ligand-Protein Contacts for 1GZ0 CSU: Contacts of Structural Units for 1GZ0 Likely Quarternary Molecular Structure file(s) for 1GZ0 Structure Factors (522 Kb) Retrieve 1GZ0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GZ0 from S2C, [Save to disk] Re-refined 1gz0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GZ0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GZ0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GZ0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gz0a2, region A:2-77 [Jmol] [rasmolscript] [script source]     - Domain d1gz0a1, region A:78-243 [Jmol] [rasmolscript] [script source]     - Domain d1gz0b2, region B:-1-77 [Jmol] [rasmolscript] [script source]     - Domain d1gz0b1, region B:78-243 [Jmol] [rasmolscript] [script source]     - Domain d1gz0c2, region C:2-77 [Jmol] [rasmolscript] [script source]     - Domain d1gz0c1, region C:78-243 [Jmol] [rasmolscript] [script source]     - Domain d1gz0d2, region D:-1-77 [Jmol] [rasmolscript] [script source]     - Domain d1gz0d1, region D:78-243 [Jmol] [rasmolscript] [script source]     - Domain d1gz0e1, region E:78-243 [Jmol] [rasmolscript] [script source]     - Domain d1gz0f2, region F:-10-77 [Jmol] [rasmolscript] [script source]     - Domain d1gz0f1, region F:78-243 [Jmol] [rasmolscript] [script source]     - Domain d1gz0g1, region G:78-243 [Jmol] [rasmolscript] [script source]     - Domain d1gz0h2, region H:-7-77 [Jmol] [rasmolscript] [script source]     - Domain d1gz0h1, region H:78-243 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gz0_A] [1gz0_D] [1gz0_B] [1gz0_E] [1gz0] [1gz0_G] [1gz0_C] [1gz0_F] [1gz0_H] SWISS-PROT database: [P63177] Domain organization of [RLMB_ECOLI] by SWISSPFAM Domain found in 1GZ0: [SpoU_sub_bind ] by SMART

Other resources with information on 1GZ0

Community annotation for 1GZ0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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