1GZ7 Hydrolase date May 17, 2002
title Crystal Structure Of The Closed State Of Lipase 2 From Candi
authors J.M.Mancheno, J.A.Hermoso
compound source
Molecule: Lipase 2
Chain: A, B, C, D
Ec: 3.1.1.3
Organism_scientific: Candida Rugosa
Organism_common: Yeast
Organism_taxid: 5481
symmetry Space Group: P 1
R_factor 0.200 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.150 91.140 108.460 90.78 106.31 86.91
method X-Ray Diffractionresolution 1.97 Å
ligand GOL, NAG enzyme Hydrolase E.C.3.1.1.3 BRENDA
related structures by homologous chain: 1CLE, 1LLF
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural insights into the lipase/esterase behavior in the Candida rugosa lipases family: crystal structure of the lipase 2 isoenzyme at 1.97A resolution., Mancheno JM, Pernas MA, Martinez MJ, Ochoa B, Rua ML, Hermoso JA, J Mol Biol 2003 Oct 3;332(5):1059-69. PMID:14499609
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (354 Kb) [Save to disk]
  • Biological Unit Coordinates (1gz7.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (1gz7.pdb2.gz) 91 Kb
  • Biological Unit Coordinates (1gz7.pdb3.gz) 90 Kb
  • Biological Unit Coordinates (1gz7.pdb4.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 1GZ7
  • CSU: Contacts of Structural Units for 1GZ7
  • Likely Quarternary Molecular Structure file(s) for 1GZ7
  • Retrieve 1GZ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GZ7 from S2C, [Save to disk]
  • View 1GZ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GZ7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GZ7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gz7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gz7b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1gz7c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1gz7d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gz7_D] [1gz7] [1gz7_B] [1gz7_C] [1gz7_A]
  • SWISS-PROT database: [P32946]
  • Domain organization of [LIP2_CANRU] by SWISSPFAM
  • Other resources with information on 1GZ7
  • Community annotation for 1GZ7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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