1H5U Glycogen Metabolism date May 25, 2001
title The 1.76 A Resolution Crystal Structure Of Glycogen Phosphor Complexed With Glucose And Cp320626, A Potential Antidiabet
authors N.G.Oikonomakos, S.E.Zographos, V.T.Skamnaki, G.Archontis
compound source
Molecule: Glycogen Phosphorylase
Chain: A
Synonym: Myophosphorylase
Ec: 2.4.1.1
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Muscle
symmetry Space Group: P 43 21 2
R_factor 0.211 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.966 128.966 116.186 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand CHI, GLC, PLP BindingDB enzyme Transferase E.C.2.4.1.1 BRENDA
related structures by homologous chain: 1C8K
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe 1.76 A resolution crystal structure of glycogen phosphorylase B complexed with glucose, and CP320626, a potential antidiabetic drug., Oikonomakos NG, Zographos SE, Skamnaki VT, Archontis G, Bioorg Med Chem 2002 May;10(5):1313-9. PMID:11886794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (1h5u.pdb1.gz) 275 Kb
  • LPC: Ligand-Protein Contacts for 1H5U
  • CSU: Contacts of Structural Units for 1H5U
  • Likely Quarternary Molecular Structure file(s) for 1H5U
  • Retrieve 1H5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H5U from S2C, [Save to disk]
  • View 1H5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H5U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H5U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h5ua_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h5u] [1h5u_A]
  • SWISS-PROT database: [P00489]
  • Domain organization of [PYGM_RABIT] by SWISSPFAM
  • Other resources with information on 1H5U
  • Community annotation for 1H5U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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